REFEREED JOURNAL PUBLICATIONS

2019

R. Liu, C. H. Chu, N. Wang, T. Ozkaya-Ahmadov, O. Civelekoglu, D. Lee, A K M Arifuzzman and A. F. Sarioglu, “Combinatorial immunophenotyping of cell populations with an electronic antibody microarray”, Small, DOI: 10.1002/smll.201904732 (2019) [link]

C. H. Chu, R. Liu, T. Ozkaya-Ahmadov, M. Boya, B. E. Swain, J. M. Owens, E. Burentugs, M. A. Bilen, J. F. McDonald and A. F. Sarioglu, “Hybrid negative enrichment of circulating tumor cells from whole blood in a 3D-printed monolithic device”, Lab on a Chip, 19, 3427 (2019) [link]

I. F. Akyildiz, J. Chen, M. Ghovanloo, U. Guler, T. Ozkaya-Ahmadov, M. Pierobon, A. F. Sarioglu and B. D. Unluturk, “Microbiome-gut-brain axis as a biomolecular communication network for the internet of Bio-NanoThings”, IEEE Access, 7, 136131 (2019) [link]

N. Wang, R. Liu, N. Asmare, C. H. Chu and A. F. Sarioglu, “Processing code-multiplexed Coulter signals via deep convolutional neural networks”, Lab on a Chip, 19, 3292 (2019) [link]

O. Civelekoglu, N. Wang, M. Boya, T. Ozkaya-Ahmadov, R. Liu and A. F. Sarioglu, “Electronic profiling of membrane antigen expression via immunomagnetic cell manipulation”, Lab on a Chip, 19, 2444 (2019) [link]

2018

R. Oklu, R. Sheth, H. Albadawi, I. Bhan, A. F. Sarioglu, M. Choz, M. Zeinali, V. Deshpande, S. Maheswaran, D. A. Haber, S. L. Stott, A. X. Zhu, L. Goyal, M. Toner and D. T. Ting, “Relationship between hepatocellular carcinoma circulating tumor cells and tumor volume” Cancer Convergence, 2, 2 (2018) [link]

R. Liu, N. Wang, N. Asmare and A. F. Sarioglu, “Scaling code multiplexed electrode networks for distributed Coulter detection in microfluidics”, Biosensors and Bioelectronics, 120, 30 (2018)  [link]

BiosensorsRL

2017

B. Tasadduq, W. Lam, A. Alexeev, A. F. Sarioglu and T. Sulchek, “Enhancing size based size separation through vertical focus microfluidics using secondary flow in a ridged microchannel”, Scientific Reports, 7, 17375 (2017)  [link]

scientific-reports4

B. Tasadduq, B. McFarland, M. Islam, A. Alexeev, A. F. Sarioglu and T. Sulchek, “Continuous sorting of cells based on different P selectin glycoprotein ligand expression using molecular adhesion”, Analytical Chemistry, 89, 11545 (2017) [link]

Anal Chem

R. Liu, W. Waheed, N. Wang, O. Civelekoglu, M. Boya, C. H. Chu and A. F. Sarioglu, “Design and modeling of electrode networks for code-division multiplexed resistive pulse sensing in microfluidic devices”, Lab on a Chip, 17, 2650 (2017) [link]

modeling

N. Wang, R. Liu and A. F. Sarioglu, “Microfluidic platform with multiplexed electronic detection for spatial tracking of particles”Journal of Visualized Experiments, (121), e55311, (2017) [link]

jove

2016

S. H. Au, B. D. Storey, J. C. Moore, Q. Tang, Y-L. Chen, S. Javaid, A. F. Sarioglu, R. J. Sullivan, M. W. Madden, R. O’Keefe, D. M. Langenau, D. A. Haber, S. Maheswaran, S. L. Stott and M. Toner, “Clusters of circulating tumor cells traverse capillary-sized vessels,”Proc. Natl. Acad. Sci. USA, 113, 4947 (2016) [link]

R. Liu, N. Wang, F. Kamili and A. F. Sarioglu, “Microfluidic CODES: a scalable multiplexed electronic sensor for orthogonal detection of particles in microfluidic channels”, Lab on a Chip, 16, 1350 (2016) [link]

LoC-2016

2015

A. F. Sarioglu, N. Aceto, N. Kojic, M. C. Donaldson, M. Zeinali, B. Hamza, A. Engstrom, H. Zhu, T. K. Sundaresan, D. T. Miyamoto, X. Luo, A. Bardia, B. S. Wittner, S. Ramaswamy, T. Shioda, D. T. Ting, S. L. Stott, R. Kapur, S. Maheswaran, D. A. Haber, M. Toner, “A microfluidic device for label-free, physical capture of circulating tumor cell-clusters”, Nature Methods, 12, 685 (2015) [link]

Nature_2015

N. Kojic, M. Milosevic, D. Petrovic, V. Isailovic, A. F. Sarioglu, M. Kojic and M. Toner, “A computational study of circulating large tumor cells traversing microvessels”, Computers in Biology and Medicine, 63, 187 (2015) [link]

CIBM_2015

Prior to 2014

C. Chang, A. Moini, A. Nikoozadeh, A. F. Sarioglu, N. Apte, X. Zhuang and B. T. Khuri-Yakub, “Singulation for imaging ring arrays of capacitive micromachined ultrasonic transducers”, Journal of Micromechanics and Microengineering, 24, 107002 (2014) [link]

JMM_2014_1

C. Chang, K. Firouzi, K. K. Park, A. F. Sarioglu, A. Nikoozadeh, H. –S. Yoon, S. Vaithilingam, T. Carver and B. T. Khuri-Yakub, “Acoustic lens for capacitive micromachined ultrasonic transducers”, Journal of Micromechanics and Microengineering, 24, 085007 (2014) [link]

JMM_2014_2

A. F. Sarioglu, S. Magonov, and O. Solgaard, “Tapping-mode force spectroscopy using cantilevers with interferometric high-bandwidth force sensors,” Applied Physics Letters, 100, 053109 (2012). [link]

  • Selected as an invited paper for the February 13, 2012 issue of Virtual Journal of Nanoscale Science & Technology

APL_2012

A. F. Sarioglu, M. Kupnik, S. Vaithilingam, and B. T. Khuri-Yakub, “Nanoscale topography of thermally-grown oxide films at right-angled convex corners of silicon,” Journal of The Electrochemical Society, 159, H79 (2012). [link]

JECS_2012

A. F. Sarioglu, M. Liu, and O. Solgaard, “High resolution nanomechanical mapping using interferometric-force-sensing AFM probes,” IEEE Journal of Microelectromechanical Systems, 20, 654 (2011). [link]

JMEMS_2011

A. F. Sarioglu, and O. Solgaard, “Modeling, design and analysis of interferometric cantilevers for time-resolved force measurements in tapping-mode atomic force microscopy,” Journal of Applied Physics, 109, 064316 (2011). [link]

  • Selected as an invited paper for the April 11, 2011 issue of Virtual Journal of Nanoscale Science & Technology.

JAP_2011

S. Hadzialic, S. Kim, A. F. Sarioglu, A. S. Sudbo, and O. Solgaard, “Displacement sensing with a mechanically tunable photonic crystal,” IEEE Photonics Technology Letters, 22, 1196 (2010). [link]

PTL_2010

A. F. Sarioglu, and O. Solgaard, “Cantilevers with integrated sensor for time-resolved force measurement in tapping-mode atomic force microscopy,” Applied Physics Letters, 93, 023114 (2008). [link]

  • Selected as an invited paper for the July 28, 2008 issue of Virtual Journal of Nanoscale Science & Technology.
  • Featured in January 2009 issue of Photonics Spectra.

APL_2008

A. F. Sarioglu, A. Atalar, and F. L. Degertekin, “Modeling the effect of subsurface interface defects on contact stiffness for ultrasonic atomic force microscopy,” Applied Physics Letters, 84, 5368 (2004). [link]

APL_2004

INVITED BOOK CHAPTERS

M. Boya, C. H. Chu, R. Liu, T. Ozkaya-Ahmadov and A. Fatih Sarioglu, “Circulating Tumor Cell Enrichment Technologies”, Chapter 2 of Tumor Liquid Biopsies , pp. 25-55, edited by F. Schaffner, J-L. Merlin, N. von Bubnoff, Springer Nature, In press. [link]

A. F. Sarioglu and O. Solgaard, “Time-resolved tapping-mode atomic force microscopy”, Chapter 1 of Scanning Probe Microscopy in Nanoscience and Nanotechnology 2, pp. 3-37, edited by B. Bhushan, Springer-Verlag (2011). [link]

CONFERENCE PROCEEDINGS AND ABSTRACTS 

2019

  • N. Wang, R. Liu, N. Asmare and A. F. Sarioglu, “Processing of Code-Multiplexed Coulter Signals with a Two-Stage Deep Learning Algorithm”, BMES, Philadelphia, PA, USA, October, 2019
  • O. Civelekoglu, N. Wang, R. Liu, M. Boya, T. Ozkaya-Ahmadov and A. F. Sarioglu, “High Dynamic Range Cell Membrane Profiling via Exposure-Modulated Magnetophoretic Cytometry”, BMES, Philadelphia, PA, USA, October, 2019
  • N. Asmare, A K M Arifuzzman, N. Wang, M. Boya, R. Liu and A. F. Sarioglu, “Electrical Cell Mechanotyping Using a Parallelized
    Deformability Cytometer”, BMES, Philadelphia, PA, USA, October, 2019
  • C. H. Chu, R. Liu, and A. F. Sarioglu, “Label-Free Enrichment of Circulating Tumor Cells via Immunofuntionalized Micropore Filter”, BMES, Philadelphia, PA, USA, October, 2019
  • C. H. Chu, R. Liu, T. Ozkaya-Ahmadov and A. F. Sarioglu, “A Monolithic Device Coupling Immunoaffinity and Filtration for Circulating Tumor Cell Enrichment”, BMES, Philadelphia, PA, USA, October, 2019
  • R. Liu, C. H. Chu, T. Ozkaya-Ahmadov, N. Wang, O. Civelekoglu, D. Lee, A K M Arifuzzman and A. F. Sarioglu, “Immunophenotyping of Cell Suspensions with an Electronic Microfluidic Antibody Microarray”, BMES, Philadelphia, PA, USA, October, 2019
  • N. Wang, R. Liu, N. Asmare, D. B. Anandakumar and A. F. Sarioglu, “Decoding of Code-Multiplexed Coulter Sensor Signals via Deep Learning”, Transducers, Berlin, GERMANY, June, 2019
  • N. Asmare, A K M Arifuzzman, N. Wang, M. Boya, R. Liu and A. F. Sarioglu, “High Throughput Cell Mechanophenotyping via Microfluidic Constrictions with Multiplexed Electrical Sensors”, Transducers, Berlin, GERMANY, June, 2019
  • O. Civelekoglu, N. Wang, M. Boya, T. Ozkaya-Ahmadov, R. Liu and A. F. Sarioglu, “Quantitative Measurement of Cell Surface Expression via Magnetophoretic Cytometry”, Transducers, Berlin, GERMANY, June, 2019 [link]
  • R. Liu, C. H. Chu, M. Boya, D. Lee, O. Civelekoglu, H. Chen and A. F. Sarioglu, “Analysis and Characterization of Soft-Lithography-Compatible Parallel-Electrode-Sensors in Microfluidic Devices”, Transducers, Berlin, GERMANY, June, 2019 [link]

2018

  • O. Civelekoglu, N. Wang, M. Boya, T. Ozkaya-Ahmadov, R. Liu and A. F. Sarioglu, “High Dynamic Range Electrical Profiling of Surface Expression via Flow-Rate-Modulated-Magnetophoresis” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • N. Wang, R. Liu and A. F. Sarioglu, “Convolutional Neural Network Based Processing of Code-Multiplexed Coulter Signals” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • N. Wang, R. Liu and A. F. Sarioglu, “Code-Multiplexed Sensor Networks for Microfluidic Impedance Spectroscopy” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • R. Liu, C. H. Chu, O. Civelekoglu, H. Chen and A. F. Sarioglu, “Soft Lithography Compatible Fabrication of Parallel Electrodes in Microfluidic Devices” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • C. H. Chu, R. Liu, T. Ozkaya-Ahmadov and A. F. Sarioglu, “Leukocyte Immunodepletion Using an Additively-Manufactured Multi-Layer Microfluidic Device” MicroTAS, Kaohsiung, TAIWAN, November, 2018
  • R. Liu, C. H. Chu, N. Wang and A. F. Sarioglu, “Microfluidic Antibody Microarray with an Electronic Readout for Combinatorial Immunophenotyping of Cell Populations” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • R. Liu, N. Wang and A. F. Sarioglu, “Bit Error Rate Analysis of Code-Multiplexed Coulter Sensor Networks” MicroTAS, Kaohsiung, TAIWAN, November, 2018 [link]
  • N. Asmare, A K M Arifuzzman, M. Boya, N. Wang, R. Liu, C. H. Chu and A. F. Sarioglu, “Electronic Cell Analyzer for High Throughput Microfluidic Mechanotyping” MicroTAS, Kaohsiung, TAIWAN, November, 2018
  • O. Civelekoglu, M. Boya and A. F. Sarioglu, “Electrical Profiling of Cell Surface Expression via Magnetophoresis and Microfluidic CODES” BMES, Atlanta, GA, USA, October 2018 
  • C. H. Chu, R. Liu, T. Ozkaya-Ahmadov and A. F. Sarioglu, “Immunoaffinity-Based Leukocyte Depletion from Whole Blood via 3D-Printed Microfluidic Chips” BMES, Atlanta, GA, USA, October, 2018
  • N. Wang, R. Liu and A. F. Sarioglu, “Decoding of Code-Multiplexed Coulter Signals via Convolutional Neural Networks” BMES, Atlanta, GA, USA, October 2018
  • N. Asmare, A K M Arifuzzman and A. F. Sarioglu, “All-Electronic Microfluidic Cell Analyzer for High-Throughput Mechanophenotyping” BMES, Atlanta, GA, USA, October, 2018
  • O. Civelekoglu, N. Wang, M. Boya, T. Ozkaya-Ahmadov, R. Liu and A. F. Sarioglu, “A Microfluidic Device for Electrical Quantification of Surface Antigen Density via Magnetophoresis” NEMB, Los Angeles, CA, USA, August, 2018

2017

  • N. Wang, R. Liu, M. Boya  and A. F. Sarioglu, “ A Microfluidic Sensor Using Frequency Division Multiple Access for Multiplexed Detection of Cells in Microfluidic Channels”, MicroTAS, Savannah, GA, October, 2017
  • R. Liu,  N. Wang, Chia-Heng Chu  and A. F. Sarioglu, “ A Microfluidic Device for Label-Free Electronic Immunophenotyping of Cell Populations”, MicroTAS, Savannah, GA, October, 2017
  • O. Civelekoglu, R. Liu, M. Boya, C. H. Chu, N. Wang and A. F. Sarioglu, “ A Microfluidic Device for Electronic Cell Surface Expression Profiling Using Magnetophoresis”, Transducers, Kaohsiung, TAIWAN, June, 2017 [link]
  • R. Liu, N. Wang, C. H. Chu, and A. F. Sarioglu, “The Effect of the Electrode Resistance on the Performance of Code-Multiplexed Resistive Pulse Sensing” Transducers, Kaohsiung, TAIWAN, June, 2017 [link]
  • N. Wang, R. Liu, R. Khodambashi, N. Asmare and A. F. Sarioglu, “Code-Division Multiplexed Resistive Pulse Sensor Networks for Spatio-Temporal Detection of Particles in Microfluidic Devices”, IEEE, Las Vegas, NV, January, 2017 [link]

2016

  • R. Liu, N. Wang, C. H. Chu and A. F. Sarioglu, “Multiplexed Resistive Pulse Sensing of Cells Using Digital Pulse Sequences” MicroTAS, Dublin, IRELAND, October, 2016
  • N. Wang, R. Liu, C. H. Chu and A. F. Sarioglu, “A Multiplexed Resistive Pulse Sensor for Simultaneous Detection of Cells in a Multi-Channel Microfluidic Chip” MicroTAS, Dublin, IRELAND, October, 2016
  • R. Liu, N. Wang, W. Waheed, C. H. Chu and A. F. Sarioglu, “Modeling Coplanar Electrode Networks for Multiplexed Resistive Pulse Sensing of Cells in Microfluidic Channels” MicroTAS, Dublin, IRELAND, October, 2016
  • R. Liu, N. Wang, W. Waheed and A. F. Sarioglu, “A Scalable Electronic Sensor for Multiplexed Detection of Cells in Different Microfluidic Channels” Proc. Hilton Head Solid-State Sens., Actuators and Microsyst. Workshop, Hilton Head, SC, June, 2016


2015

  • B. D. Storey, S. H. Au, Y-L. Chen, A. F. Sarioglu, S. Javaid, D. A. Haber, S. Maheswaran, S. L. Stott and M. Toner, “Transcapillary Trafficking of Clustered Circulating Tumor Cells,” 68th Annual Meeting of the APS Division of Fluid Dynamics, Boston, MA, November 22-24, 2015.
  • B. Tasadduq, G. Wang, W. Mao, W. Lam, A. Alexeev, A. F. Sarioglu and T. Sulchek, “Continuous size separation of micro/nano particles using ridged microchannel by controlling particle position in the z-direction,” 68th Annual Meeting of the APS Division of Fluid Dynamics, Boston, MA, November 22-24, 2015.
  • S. H. Au, B. D. Storey, Y-L. Chen, A. F. Sarioglu, S. Maheswaran, D. A. Haber, S. L. Stott and M. Toner, “Hydrodynamic Analysis of CTC-Cluster Transit Through Capillary Constrictions,” BMES Annual Meeting, Tampa, FL, October 7-10, 2015.


Prior to 2014

  • A. F. Sarioglu, N. Aceto, N. Kojic, M. C. Donaldson, M. Zeinali, B. Hamza, A. Engstrom, H. Zhu, T. K. Sundaresan, D. T. Miyamoto, X. Luo, A. Bardia, B. S. Wittner, S. Ramaswamy, T. Shioda, D. T. Ting, S. L. Stott, R. Kapur, S. Maheswaran, D. A. Haber and M. Toner, “Circulating Tumor Cell Cluster-Chip,” BMES Annual Meeting, San Antonio, TX, October 22-25, 2014.
  • N. Apte, S. Vaithilingam, A. F. Sarioglu, M. Kupnik, and B. T. Khuri-Yakub, “Large area 1D CMUT phased arrays for multi-modality ultrasound imaging,” Proc. IEEE Ultrasonics Symp., 2011, pp.612-615.
  • A. Moini, A. Nikoozadeh, O. Oralkan, J. W. Choe, A. F. Sarioglu, D. N. Stephens, A. de la Rama, P. Chen, A. Dentinger, D. Wildes, L. S. Smith, K. Thomenius, K. Shivkumar, A. Mahajan, M. O’Donnell, D. J. Sahn and P. T. Khuri-Yakub, “Volumetric intracardiac imaging using a fully integrated CMUT ring array: recent developments,” Proc. IEEE Ultrasonics Symp., 2011, pp.692-695.
  • O. Solgaard and A. F. Sarioglu, “Nanoscale material characterization using AFM cantilevers with differential interferometric force sensors,” Seeing at the Nanoscale VII, Santa Barbara, CA, July 28-31, 2009.
  • A. F. Sarioglu, M. Liu, and O. Solgaard, “Interferometric force sensing AFM probes for nanomechanical mapping of material properties,” Proc. 15th IEEE Int. Conf. Solid-State Sens., Actuators, and Microsyst.-Transducers, 2009, pp.1634-1637.
  • A. F. Sarioglu and O. Solgaard, “Time-Resolved Tapping-Mode Force Microscopy,” 5th Annual Nanoprobes Workshop, Stanford, CA, April 24, 2009.
  • A. F. Sarioglu and O. Solgaard, “Time-resolved force measurements and material mapping using differential interferometric force sensors,” 1st Multifrequency AFM Conf., Madrid, Spain, September 14-15, 2008.
  • A. F. Sarioglu and O. Solgaard, “Time-Resolved Scanning Force Microscopy,” 4th Annual Nanoprobes Workshop, Stanford, CA, May 23, 2008.
  • A. F. Sarioglu and O. Solgaard, “Time-Resolved Scanning Force Microscopy,” Berkeley Nanotechnology Forum, Berkeley, CA, April 27, 2008.
  • K. X. Sun, P. P. Lu, A. F. Sarioglu, O. Solgaard and R. L. Byer, “Measuring small rotations with the grating angular sensor,” Stanford Photonics Research Center Annual Symposium, Stanford, CA, September 18, 2006.
  • B. Bayram, M. Kupnik, G. G. Yaralioglu, O. Oralkan, Lin Dersong, Z. Xuefeng, A. S. Ergun, A. F. Sarioglu, S. H. Wong, and B. T. Khuri-Yakub, “Characterization of cross-coupling in capacitive micromachined ultrasonic transducers,” Proc. IEEE Ultrasonics Symp., 2005, pp. 601-604.